Scaffold Ga0208980_10078843

Overview

Basic Information

• Taxon OID: 3300027887
• Scaffold ID: Ga0208980_10078843
• Source Dataset Name: Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1927
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Candidatus Desulfacyla → Candidatus Desulfacyla euxinica (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland → Microbial Community Impact On Carbon Sequestration In Managed Wetland Carbon Farming

Source Dataset Sampling Location

• Location Name: Twitchell Island, Sacramento and San Joaquin Delta, California, USA
• Coordinates
  • Lat. (^o): 38.107
  • Long. (^o): -121.6475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039197	Metagenome	164	Y
F067248	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208980_100788432	F039197	N/A	VKGAWVALGIPFDVPMTDERLEGIIDVEALIMTTLLLMEQDRTATDLPAWLNRFSGLVNHQKLKTMFNTMPGQHRSTIVEKVSQSPFRGAPKSIRDIFNLKPASDAVTKTVQMRERKLNTLENVADASIMIRNRLQYGTGFRADIIALTQVKGFGMKGTQFARLLCTNDSTVSRVLGDLRACRFLDQDNERIGPVEPYPGMFISSQSMWNLCEMMDAARFSFQELKRGALENLNLRLDGLGIKVLKELI
Ga0208980_100788433	F067248	N/A	MIRELNEMVKPLKENEIVENLKLLADWLRVKYPGEHFELIVAGGAAMTLEGFKGQTTDIDLMSPKVLPDSVKKGVAHVGRVKRLGAEWLNTSLANMLSKAAGSVKLPKYFSEISRTLEVSDNLKIGLISRQALISLKLYAVTPSYRKHTEDMSNLRPSKREITEALRFVMSIDDSVPRKDDLRIVMKELGYDFDEIHHSLAKKSKHLRERRVGSPRHPF