Scaffold Ga0208980_10003027

Overview

Basic Information

• Taxon OID: 3300027887
• Scaffold ID: Ga0208980_10003027
• Source Dataset Name: Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10193
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland → Microbial Community Impact On Carbon Sequestration In Managed Wetland Carbon Farming

Source Dataset Sampling Location

• Location Name: Twitchell Island, Sacramento and San Joaquin Delta, California, USA
• Coordinates
  • Lat. (^o): 38.107
  • Long. (^o): -121.6475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022683	Metagenome / Metatranscriptome	213	N
F041288	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208980_1000302710	F022683	GGAGG	MASDMSDNMKPAADFYTRWSKDSLDMLSKGMTMYNKMSKGWMDVAEGSSGEKPDDMLKKWGDAFSGSYNDLFEMYMQPFKKFSAGQAPGKEAWEEAFAKWQKMFTSMPAGAAPTAAPEEFVNFSKNWFEGYAKVWQTWLESVQKMGDACKTAVREGEKPGAAMRDVSEISDRFMKEWSAFVSEQAQSFFALWKSRLPAEKKEPKKARKE
Ga0208980_100030279	F041288	AGGAG	MANTKTDHRIPAALATILVVSAVLLLSVWGFTATMLNSRQLPTEQTLKGSTGSEKFNTLRFETYGGQPEYRLIGYFLYKDGIRVSGDGPQLEPIGKLSLNEVFADQERVAKAKFYNTSKLNIREIIRDNSVIGYAVSDLKMEITLWDKTTDPSSISLELRFKDLQAKGERYYGGPR