Scaffold Ga0209450_10000493

Overview

Basic Information

• Taxon OID: 3300027885
• Scaffold ID: Ga0209450_10000493
• Source Dataset Name: Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20275
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (18.92%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location

• Location Name: University of Notre Dame, Indiana, USA
• Coordinates
  • Lat. (^o): 41.7
  • Long. (^o): -86.23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024717	Metagenome	204	Y
F025680	Metagenome	200	N
F033329	Metagenome	177	N
F057894	Metagenome	135	N
F060610	Metagenome	132	Y
F061497	Metagenome	131	Y
F065376	Metagenome	127	Y
F065768	Metagenome	127	N
F079784	Metagenome	115	N
F085061	Metagenome	111	Y
F102623	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209450_100004931	F102623	N/A	YATAVEIYNYGLTISPNQRVNTTVSVNTGFSTSDPNDGMIAGRDIAATRYSEELTAMLQNMRMPDDNTCFDCRRNMKYVTALP
Ga0209450_1000049315	F065376	N/A	MNAANIDNITDFYKSLNSTKMLEAQSMIAGAPSAIEDKLTYDMSAVSIKAANEAIKHIETNRKLVTLPLDTYKKEIMEVERDAIAPLKAYIEERKQMMIDYSNELERKKAEADAKIAQQAADALISASTSDVSDIFAIFTDATTTTTLELDHTKNIRISKKAEIVGEVDWATVLWTLMRAEMFDVAELLRKLPKAMEITNIDRINGIELTEVKTQVIR
Ga0209450_1000049316	F085061	N/A	MNELDNIHYEFKQFNRYLDAIIDPRECDNDTMEAKVKEAIIQAYSNGYHDGQKAIIDRFPRPSSQGGEEGGRDYYESL
Ga0209450_100004932	F024717	N/A	MATPKEISDRINALFSEWNNGFTPLSFAVQDMRREMYIRIFGIDTGRGRNQAGNFLPTKPYTPAYAKIKQANGRPPLELTGFLKRSFATDQTTIITEGFDTAIYTVADEAGKVEGLEKLYGTIFKPTAEEQSRMLQLHADLLVEQIANQISKP
Ga0209450_1000049320	F033329	N/A	MSRDIYNSIEAINASSIKRHFTGSIQYAAGALERGAEFHRNLLETDAKDMPPNARVIYDAIMKHPMLRLVFEKSAKEITFIKEIDIDGRKVAAKGILDLHCPMYSINADIKTTSCTTLRAFASDMTKHYNHIQAVWYSYLTGYSPTNFYYIGVPNKFKGELFIHRHTTEEIDTAENLIREYLEHRGL
Ga0209450_1000049328	F057894	N/A	MAANRWRSGYMRLQDDSFTGYLTPIGSVQDVEVTFKLKVMQQIMEASEDIQMEVPNEYLIGSLKQNDEGYYTADVIIYNKVVRLKLTEDEIKRSKTLSL
Ga0209450_1000049334	F065768	GAG	MSVCSPCYDAGSYVNACLTEFSFGIVEADTLYYVWLQHNATGKIQQFEATSDGEGYLNIEGIQIDPLQGYTIWVTDSAGSQEQLDITVDGDIYKCLSFSAVSVGLSPVVIP
Ga0209450_1000049337	F025680	N/A	MKYIKELNGRLRSLWGSKKTTHNLVEVFTHEGHTYYRFPKEVNLPLERFSMSMSLLERLSSGISGAEMELILSEMEKALGAGLSNPKNAALIGAYIHVIRERQDTVIHRDILLNIAATWLVRDDEDPNIVNSDIHNYKLELFEQLSKGGAKDFFSSLGIDPLMPLLTMSPEDFQ
Ga0209450_100004934	F061497	N/A	MIEITLEGGYVTFSTSVIGAIASNVEICEVVDESTLHLGTNVGTFLINVNQFSFNGIQFTDSTKAVNYILNN
Ga0209450_100004938	F079784	N/A	MAARRVNKPRQVLDIFIKYWRPTIGSLVILSSVFALIFKQITTETLAAIVAAMVAAGYIPKANDNG
Ga0209450_100004939	F060610	N/A	MDEGRDSTYTTIDEGCVVGLGCKVHTHHHTIHIEPQIVYQSMVKFTIFGKQYCTNQWGQTYELPTDEPIPEPTLMQQTYASDTITPTTSAFLLAPKPEAKIIIKPRTEYSDYKPTMDGPVMGTLLVFTIYITAHWAWNSMSAWNNLYSELSACLRSSS