Scaffold Ga0209713_10627865

Overview

Basic Information

• Taxon OID: 3300027883
• Scaffold ID: Ga0209713_10627865
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean- Svalbard ARC20M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 690
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean
• Coordinates
  • Lat. (^o): 78.8697
  • Long. (^o): 8.1122
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020017	Metagenome / Metatranscriptome	226	Y
F095250	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209713_106278651	F020017	N/A	SNRGNMNNQAFIGGLGPLIQGAGRLLAPASKFLQSPGGSAVGIATGVGSVLASNMGTRSREKPVLTQSRRNKSKVRQLTMFMGIEGTANFLSQSSGMNVTANDVVSLLLRTFRNDGAYITKAQVRNLRRTTNRFKSLEKQVKEATSMSRTTRRPPVRRSASSTTLIRN
Ga0209713_106278652	F095250	AGGA	MPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRIASAVDTAGTTSALDTFLNVSVNN