Scaffold Ga0209590_10034220

Overview

Basic Information

• Taxon OID: 3300027882
• Scaffold ID: Ga0209590_10034220
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2715
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004205	Metagenome / Metatranscriptome	448	Y
F006201	Metagenome / Metatranscriptome	379	Y
F078275	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209590_100342201	F004205	GGAGG	MEAHVTSQSQSFRLVEKMEQASIHHGQEIRADLPNVRVLALAGGEQGQVLFCNLGPIRVREILNGGDGRPLPTNVRLEGLEVVASGTYDLLNALVSSNGDLRLVVDDQTRVVPGASVVGAAVV
Ga0209590_100342202	F006201	AGGAGG	MNPEEKVLLTTAFEALGPERVTRGLKATGHSWSDCFLALAISGEPDALAREMEKAHRKKHVVGALIGVPVQVVNEVVRLWDHDEQSFRALVAEWLELSRAAVPTAPAATAWA
Ga0209590_100342204	F078275	AGGAGG	VAKLERHQDRDSWVSWAIEFVRRGLWPADLITVHGPPASPADHFWGDAEAWDESGTWCYTVAFQTPARHGWDRRGVRLWDAEHPGTHFPVVRRSAMSHAQRRWLRIARRLAGTQWQTSGR