Scaffold Ga0209169_10029084

Overview

Basic Information

• Taxon OID: 3300027879
• Scaffold ID: Ga0209169_10029084
• Source Dataset Name: Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2942
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location

• Location Name: USA: New Hampshire, Hubbard Brook experimental Forest
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002560	Metagenome / Metatranscriptome	548	Y
F004412	Metagenome / Metatranscriptome	439	Y
F018766	Metagenome / Metatranscriptome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209169_100290841	F018766	N/A	ACVVREIERMERALGKRMYRGLLKTLARVWNPKDIQDPALQQKVLAHMQAAERGFRRLDAAINRVGPEPLTHMLRALKLQALDRVDNLQTLHEIVLALEEAAQREAVKQ
Ga0209169_100290844	F004412	AGGA	MEDQPSITGQALSPEEAAAKAAILAECGRLAEAGITFVAVHFDGAGDEGASEDIKCYTTEDHAYEESEVQDTNVSHLQEHFETLVPYGYEDGCGGFGDIILNVKTRKITVERNDRFEDYTTSTYEV
Ga0209169_100290848	F002560	AGGAGG	MVEHNPPVPSDRTRPPVIPLPIALYVSGELSFELYDGGQPNRRFSIRWERFVPTKENEPEAERPQTVLRTHQ