Basic Information | |
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Taxon OID | 3300027879 Open in IMG/M |
Scaffold ID | Ga0209169_10029084 Open in IMG/M |
Source Dataset Name | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2942 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions. |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: New Hampshire, Hubbard Brook experimental Forest | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002560 | Metagenome / Metatranscriptome | 548 | Y |
F004412 | Metagenome / Metatranscriptome | 439 | Y |
F018766 | Metagenome / Metatranscriptome | 233 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209169_100290841 | F018766 | N/A | ACVVREIERMERALGKRMYRGLLKTLARVWNPKDIQDPALQQKVLAHMQAAERGFRRLDAAINRVGPEPLTHMLRALKLQALDRVDNLQTLHEIVLALEEAAQREAVKQ |
Ga0209169_100290844 | F004412 | AGGA | MEDQPSITGQALSPEEAAAKAAILAECGRLAEAGITFVAVHFDGAGDEGASEDIKCYTTEDHAYEESEVQDTNVSHLQEHFETLVPYGYEDGCGGFGDIILNVKTRKITVERNDRFEDYTTSTYEV |
Ga0209169_100290848 | F002560 | AGGAGG | MVEHNPPVPSDRTRPPVIPLPIALYVSGELSFELYDGGQPNRRFSIRWERFVPTKENEPEAERPQTVLRTHQ |
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