NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209169_10011348

Scaffold Ga0209169_10011348


Overview

Basic Information
Taxon OID3300027879 Open in IMG/M
Scaffold IDGa0209169_10011348 Open in IMG/M
Source Dataset NameWarmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4967
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003874Metagenome / Metatranscriptome464Y
F011102Metagenome / Metatranscriptome295Y
F105316Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209169_100113481F105316N/AGYSYSVAAARDGEQFGVRWWTHRQWAKTLVDEWLRLIWWRVVDQWGKAPVAAELR
Ga0209169_100113487F011102N/AMTALPVKTSCESEPYSTLACNQCSQRLPGYPRLPVTTQVNSWQALGKLSLRKQFVRRRRESILLEWRKLFCGIMIVILPTSLIAQDSARAMLHDDGGVWLNGSPAPNSSAIFLHDSVQTQKGSLAKIDADGSTAMVQPDTIVQFDGNELDLDHGSLQLNTSRGMRVRVNCMTVIPLTQEWTRYDVIDVDGRMTVEAHQNDVKIHYEGAVARSSKTAFSDVVVHQGEQVTREERCREPANPIQGTMLDSPWAVGIGAAAIGIITCWALCRGGAPVSPSKP
Ga0209169_100113488F003874N/AISDQGVPGTPSYDPDLHFGKGLTFEVNYARRVMGGELWSLALEVPFVVNADEHVNVFTDPFLGYHSYFVTPAARLNIFPGTAVSPWVSFGGGFGYFSGSSGAYPNTSGSTTGVLQAGVGLDVKIYGNLSLRGEAREFWSGVPQLDVNTGKSRQYNLFAGGGIVWHF
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