Basic Information | |
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Taxon OID | 3300027875 Open in IMG/M |
Scaffold ID | Ga0209283_10337630 Open in IMG/M |
Source Dataset Name | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 990 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California, Eel River Critical Zone Observatory | |||||||
Coordinates | Lat. (o) | 39.7291 | Long. (o) | -123.6419 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001142 | Metagenome / Metatranscriptome | 766 | Y |
F001173 | Metagenome / Metatranscriptome | 757 | Y |
F027951 | Metagenome / Metatranscriptome | 193 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209283_103376301 | F001142 | AGGAG | MGRASAASAQPRGPFAVDQDRALAELELAWSEGGYHGFTASGDSWCAISSAGEVLAGGTPDELARAIRAHWQALRG |
Ga0209283_103376302 | F027951 | AGG | MTEQDRPNLRVVVGREDSVVRRRRFEEAHPEAVVLPPCAGRWRAVLPAGLIPGDGTRTTLGAWDLADLMDQLETIYPDSSRDAAR |
Ga0209283_103376303 | F001173 | N/A | DAQRDQLTMTAGEQIPELAQWIKDLAAAHRTFAHRLADWQSLTIPPQDPDYGDLGQAFPPWPGPGKDAILQSLKPEIRPSPQILQRAADRDADFEAAD |
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