Scaffold Ga0209465_10015258

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209465_10015258

Scaffold Ga0209465_10015258

Overview

Basic Information
Taxon OID	3300027874 Open in IMG/M
Scaffold ID	Ga0209465_10015258 Open in IMG/M
Source Dataset Name	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3477
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location Name	Panama: Oeste
Coordinates	Lat. (^o)	9.1086	Long. (^o)	-79.8436	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013098	Metagenome / Metatranscriptome	274	Y
F016870	Metagenome / Metatranscriptome	244	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209465_100152581	F016870	GGAGG	MYDRTIDRMSDGASEFLVQFYLHSPKLSVSVLLAAWLILFFVALWYFVLLPATSNNLVNGSFEARLVGWGTGWLEDFPAYRGAARLNQYLATRNSQTGQLAVADWRSDPTEHRAGGRFALLIEHRSDKQTEVYSTLSQRIRVKPQTGYHVRFWAKVDRMDHDGDLWLSPNGSAVAWDEPRVEISGAGKGWQFYRLDFNSGDRTDLDIRFVA
Ga0209465_100152582	F013098	N/A	MPVAWLAAIAAAVITLGGCSSAPFAGYRNGPVTLYIGDVRHVCAAGGSGNRGCTMRYPNGRAEVYCAEGDYECLAHELRHVADPTWQHDLDDRSVSAR

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