NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209465_10005447

Scaffold Ga0209465_10005447


Overview

Basic Information
Taxon OID3300027874 Open in IMG/M
Scaffold IDGa0209465_10005447 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5545
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022629Metagenome / Metatranscriptome213Y

Sequences

Protein IDFamilyRBSSequence
Ga0209465_100054476F022629GGAGMWLDRYAAVCQDCPDLVAVYEGPDGRIALLLRQTLVPLPEEFANLRRMTRNAARIASSKFRTAGFRGGFMVLQWQPLETVASVLRDWPCRCEVDPARRAQLMAVAERYAADERYLATQAQSRRRVSPRSVGALPPFATAPELHGLQSWYDAMAPTWLGVEPLLRRALILKTHRWIAEHILIPAADGRTAPFEIRQTINRLGWALLEMIPPDDRAVWSVWVGLVIGDLERAMRRPSADWSQAWARWLLLIAYSIPIPREHPAPMWPTKLTSLVSVDPYHV

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