Scaffold Ga0209465_10003812

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0209465_10003812

Scaffold Ga0209465_10003812

Overview

Basic Information
Taxon OID	3300027874 Open in IMG/M
Scaffold ID	Ga0209465_10003812 Open in IMG/M
Source Dataset Name	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6558
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location Name	Panama: Oeste
Coordinates	Lat. (^o)	9.1086	Long. (^o)	-79.8436	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026424	Metagenome / Metatranscriptome	198	N
F035981	Metagenome / Metatranscriptome	171	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209465_100038125	F035981	AGAAGG	MRYDESSGDEILGADEILGADEILGADEVLAGGGDESAGDESSGDESAGDESSGDELVGLRLFRRKKQKGTRKVASPIVQSRLAQQGVIVKTQGYSKGRSQSLGFEFLAVQPGATVDVPANPQVLFKPKRLVYTGPAATFVIQDVKIGRSSQFVASGPQSADAYPPTSTVDNMELDTARPGVVITLRIQNVSGVAADFRATMFGQVAE
Ga0209465_100038126	F026424	GGAGG	MMNLSLEKMKKFSSEIAALKTKHEKAIHKANDVIEQGVDATLASATAFGLGIWQTRSDHQKLLGVPVDLAVGLAAHAAGFMGMGGKAAPYLHSVGNGALAAHFHTVGRGVGKEMREKAGLAPVAMSGEGPAEGGSNLSDDALLEMARRRG

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.