Scaffold Ga0209465_10001067

Overview

Basic Information

• Taxon OID: 3300027874
• Scaffold ID: Ga0209465_10001067
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12424
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026424	Metagenome / Metatranscriptome	198	N
F035981	Metagenome / Metatranscriptome	171	N
F084521	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209465_100010671	F084521	GGAG	MIGELIYSVEVAIVRCPGDGEDGAAAGPVEKPVTVRFCDICRRWGAVGTTHMCWRNWRPRLSDLLMEMTRDGRR
Ga0209465_1000106713	F026424	AGGA	MMNLSLAQVKKFGSEIHALKTKHEKAIHKANDVIEQGVEATLASATAFGLGIWQTRADHQKLLGVPVDLAVGLAAHAAGFMGMGGKAAPYLHSMGNGALAAHFHTVGRGVGKEMREKAGLAPVAMGGEGPAEGGSNLSDDALLEMARRRG
Ga0209465_1000106714	F035981	AGAAGG	MRYDDSSGEEILGAEEILGADEILGADEVLAGGGEESAGDESSGDESAGDESSGDELVGLRLFRRKKRKGTRKVQSPIVQSRLAQQGVIVKTQGYSKGRSQSLGFEFLAVQPGATVDVPANPQVLFKPKRLVYTGPAATFVIQDVKIGRSSQFVASGPQSADAYPPTSTVDNMELDTARPGVVITLRIQNISGVAADFRATMFGQVAE