Scaffold Ga0209814_10021780

Overview

Basic Information

• Taxon OID: 3300027873
• Scaffold ID: Ga0209814_10021780
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2603
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8443
  • Long. (^o): -83.9607
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000998	Metagenome / Metatranscriptome	810	Y
F003995	Metagenome / Metatranscriptome	458	Y
F009631	Metagenome / Metatranscriptome	315	Y
F015782	Metagenome	252	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209814_100217801	F009631	N/A	GYAMGMERYKGFLIDGSAIPIFVTGFDWYSQGTIFRTSRRLDSIVEIKRIRGPTFDSKGAAEEHGLKLCKDWIDKLL
Ga0209814_100217802	F015782	GAGG	MSRYKEHPIYGVAVPAPENRWYSRGLVFDRDLNQTIEIKRIESDRTFKTKNQAEKHGLELCKAWVDKRP
Ga0209814_100217803	F000998	AGGAGG	MFIETYYDERAAVPGSTSEPVIPYPELFGEELTVWREYLPMRRQIRYLYSRFNSETIPGPVITEIERAKRAPGLFDRIEIWSRTGDPMAVGVIGEEKPRYFSIVRWGDAELTLEQVKERLRVEKWMTWLTAAAGILFFVIVPFAAMAHGW
Ga0209814_100217805	F003995	GGAG	MVELARKYVETHDPKIIKELYKLGRELEKVEKSEKQ