Scaffold Ga0209579_10036666

Overview

Basic Information

• Taxon OID: 3300027869
• Scaffold ID: Ga0209579_10036666
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2655
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024594	Metagenome / Metatranscriptome	205	Y
F046502	Metagenome / Metatranscriptome	151	Y
F062067	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209579_100366662	F024594	AGGAG	MSATKLAVAVALLLSATSAALAQGPQCYGDRPYYDFYGAGWLDSELHLGIDCNTAPPANAHPHGHSRHAAADSQQRSIFR
Ga0209579_100366663	F046502	GGA	MALKYLVRLATKTFVVLGVGMSLSTAAPAFSESPSYPWCAQGSIIRCWYMTREQCEEAVNYHGFCVTDPNVPRRYGEKIRG
Ga0209579_100366664	F062067	AGGAG	MKKLLTTLAVLTAFATPAFAQYAPQDYQTAAPPSVQHKSSARQNGLHAFAMVPRAPAGSTLDDPSLTGGGSAGYNVLNRTY