Scaffold Ga0209167_10280656

Overview

Basic Information

• Taxon OID: 3300027867
• Scaffold ID: Ga0209167_10280656
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 899
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001528	Metagenome / Metatranscriptome	677	Y
F008431	Metagenome / Metatranscriptome	333	Y
F037974	Metagenome / Metatranscriptome	167	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209167_102806561	F037974	AGGAG	MPNVNHATDMLRVKQIAIDEDGKVTRRFPRIDVEGQLKNTLLFAIHPEICVLSMQVPG
Ga0209167_102806562	F001528	AGGAG	MSEKNQIVVVLVVALSLGAFVDRITALKIVAGVALLWTLQNQPTVFECIRKLFSLRRGRFSVREYRGGARTVRVS
Ga0209167_102806563	F008431	N/A	SGSRNGDVPALGRECTSEAEAIINAFREQVSFYRVSEFQTRADVGRSGEPILRKDGLKKNNPAS