Scaffold Ga0209167_10004118

Overview

Basic Information

• Taxon OID: 3300027867
• Scaffold ID: Ga0209167_10004118
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7425
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003165	Metagenome / Metatranscriptome	504	Y
F007543	Metagenome / Metatranscriptome	349	Y
F026939	Metagenome / Metatranscriptome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209167_100041182	F026939	GGAGG	MTPQASQADANLQAELDRLTYSAYLLTLDPGKAFLAVERAIDGSLEETTVHSDLLERTVELALEDVLCDSRTSWDGESSAYDVALYGQSQAINSTAFQSLQDLDGSPILLLDATSRIAFVLHHLLGYKIGDAAAKARLTEKQYRAQLRRAYVQLASFRLQDGTPARHGAEQSAPTWERKYELVEMDSRLLV
Ga0209167_100041183	F007543	AGGAG	MDSNYVFLCGVMWCKFGQKDAGQELLRAADSGDPDMKALACAMFAKGVRRFKEMDKRMQASSRVILGEGICG
Ga0209167_100041184	F003165	AGGAGG	MAKVIEFYVPKNFRKPLKCAPTLQCGTIIEFCSATKKSA