NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209755_10490467

Scaffold Ga0209755_10490467


Overview

Basic Information
Taxon OID3300027864 Open in IMG/M
Scaffold IDGa0209755_10490467 Open in IMG/M
Source Dataset NameCornitermes sp. P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Co191P1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1112
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NamePetit - Saut dam, French Guiana
CoordinatesLat. (o)5.0626Long. (o)-53.0462Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000032Metagenome4750Y
F008429Metagenome333Y
F018555Metagenome234Y

Sequences

Protein IDFamilyRBSSequence
Ga0209755_104904671F018555GGAVTRRQGRRRKKLLDDLKDRRGYYKLKEEALDRTMWR
Ga0209755_104904672F000032GGAMEKISWADHVRNEEVLLRVNEQRNILHEIIKRKANWIGHILRRKCLLKQIIEGKIKGQI
Ga0209755_104904673F008429GGAMADVASKQQTTALFLSTTVTRTRRHTELTKETDKPDGKPVLCQGTFTSVFRAVFLIS

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