Scaffold Ga0209701_10103364

Overview

Basic Information

• Taxon OID: 3300027862
• Scaffold ID: Ga0209701_10103364
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1778
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004877	Metagenome / Metatranscriptome	420	Y
F079369	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209701_101033641	F004877	GAGG	VHRVQKFVEVGSGQIGYAMTATALSEVSNGAKWNPDPSFNVAAAILADPEFASVLKVVLRDGHVMVPALKAKGK
Ga0209701_101033642	F079369	GGA	MPRKDRPTDPAEIQRSIEEAIQDLVRKGLVVDSGQRRWSQRTGRYEIAWESKLFGKTFH