Scaffold Ga0233415_10000727

Overview

Basic Information

• Taxon OID: 3300027861
• Scaffold ID: Ga0233415_10000727
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 15160
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (12.50%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.6569
  • Long. (^o): -123.4875
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018478	Metagenome	235	Y
F025412	Metagenome	202	Y
F027524	Metagenome	194	N
F028650	Metagenome	191	N
F049288	Metagenome	147	Y
F100003	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0233415_1000072710	F028650	N/A	MRIPKSLKEVLVKDYIQINKIRSAEYENPFTRTIDLLCIFNDRKDVLKCKPAELTVDLSHLLEEPSRVLKRNFTINGKRYAIVNHVNDLEAGQYMSFTTYLKGFADNPNVHIDQMPDILASVIFPVDKNNKVLAIEPSYFRNLAEDIRNTMSIEDAYPICVFFCLLCRSLILTTQDFLNHKLENMTEQSRSAILEVAKDLEKDGVGLPHSITSAMEILQKDHTTKK
Ga0233415_1000072716	F018478	N/A	MDWSKEYTYKEKKIYISHETKRYILCSFYESGKGTFKLDKTEFHG
Ga0233415_1000072717	F100003	N/A	MKIKKKHYKALQYASLIQRWKYLPYNFIFQVVQNSEVNETMLNRNRIEQNDKRI
Ga0233415_1000072720	F025412	GAG	MDYRKLKWGALKSYATKLDINTKGMTKSALLECLDAMPEVIHVVEEQLEPFKGIKQHHPLFEEIEPYIPYLKAFKKLKAVSPVPEVNKAIATLFLKYIEEQKNIRINLGCGRCKHSYYERMIAGYNKLVDEYGGDKI
Ga0233415_1000072722	F027524	N/A	VNEDFIKEKRQVIETACKNICKHSDIWRDLSQEVNIYFLTNELPENLNKIDGFIFVVAYKMFHLSGSEFNRLHFDNVLKESTELDYLKLKDIPYISENVYKEYLEQVKQLDEMERIWVEEIVKRNLSIKLFSDHTGIHRTTATERMNLIYEKLRNKNK
Ga0233415_100007278	F049288	GGA	MSEGLVTPHSTITQVLEDFGNEMQTDLRAELVKDHAYVSGDLAEQIEFTTVINGTGFVFSLRLKDYYDYVNKGVNGTRSVKNNTPYSYMQSSKIPFYFAKQWMNNKGLFVAKGTAFTSMATRKTYKAGSKDSQAFAMARSWKEKGIKGNHFYDNVVTEARLDKLSKDLASAAAGDLKIALTDTFKRLK