Scaffold Ga0209611_10005580

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209611_10005580

Scaffold Ga0209611_10005580

Overview

Basic Information
Taxon OID	3300027860 Open in IMG/M
Scaffold ID	Ga0209611_10005580 Open in IMG/M
Source Dataset Name	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	21016
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (18.52%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020482	Metagenome	223	Y
F054513	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209611_1000558020	F020482	N/A	MEETLPNKGILEKLTREGKSLAFYITVNKAKNLNKP
Ga0209611_1000558024	F054513	GAG	MEDVNRFCRGKSELFPFREFGKINNFMMSLFPIIITKEILGRNAALISFVGRITTVVTRR

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