Basic Information | |
---|---|
Taxon OID | 3300027860 Open in IMG/M |
Scaffold ID | Ga0209611_10005207 Open in IMG/M |
Source Dataset Name | Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 21942 |
Total Scaffold Genes | 27 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (37.04%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Minnesota | |||||||
Coordinates | Lat. (o) | 47.5028 | Long. (o) | -93.4828 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003475 | Metagenome | 484 | Y |
F020482 | Metagenome | 223 | Y |
F054513 | Metagenome | 139 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209611_1000520716 | F020482 | N/A | MDETLPNKGILKKLTKEGKNLTFYTVANKLKTLNKP |
Ga0209611_1000520718 | F003475 | N/A | MGNTFPKLYQVIRIAYNSGPNATHGGTITSSDAYHKAIEWFFHHMNGMVLFRRYTRSLDILELNVLIALWLFITIGEVCMFKSEMSVLGVNNVIE |
Ga0209611_1000520726 | F054513 | N/A | LLPFWELGKTNSFLMSLFSTIITREILGKNVAFTSFVGRIAIIITRR |
⦗Top⦘ |