Scaffold Ga0209611_10002147

Overview

Basic Information

• Taxon OID: 3300027860
• Scaffold ID: Ga0209611_10002147
• Source Dataset Name: Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34615
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000290	Metagenome / Metatranscriptome	1362	Y
F000386	Metagenome / Metatranscriptome	1203	Y
F011235	Metagenome / Metatranscriptome	293	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209611_1000214715	F000290	AGCAG	LAESLSLLLADLLRSVLSDASPALAADESAVERYRHLADTLADGESRRRTSLGITRAGLAKRCVTWLKLLLTPTPNAPTTAAMREFVDALGLFPALFDSEPSARSRRARLTWLLTHDRRLDASTREAATALIEACEHLGVLLWPDAETA
Ga0209611_1000214726	F000386	N/A	MTETAAYLDLHVPPDEMVKYIQDLMTLPRGEIAANSALTLAQRHWGGDTPMARAALLRWGALNLAFQDKRLETWTVTREHDRIQVPAALVAAAGIAPLLIDNERAVFDIPALLDATLEFQPPAGQA
Ga0209611_1000214734	F011235	N/A	MLEQPRTVLEVHGHLDGFWYIGAGRSIAEGPYRDPGQLLSVASDLLAAEVNWRIDVFDPAGNRLISYSSEELHADELHPLRWQNQQLWGALGASAGLRKQPTG