NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209611_10000064

Scaffold Ga0209611_10000064


Overview

Basic Information
Taxon OID3300027860 Open in IMG/M
Scaffold IDGa0209611_10000064 Open in IMG/M
Source Dataset NameHost-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)108951
Total Scaffold Genes104 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)82 (78.85%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000290Metagenome / Metatranscriptome1362Y
F000386Metagenome / Metatranscriptome1203Y
F000407Metagenome / Metatranscriptome1172Y
F024238Metagenome / Metatranscriptome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0209611_1000006445F000407AGGAGMSRIRAALIAIGATALAGCGPSAYAVRPVPRIVADNVGKPIGRLQEAFGDPRKIDTTPTRLVYFWFLPQKPAGAPMGFHGCEMEVTVDARTLRVLGYSLSNIGWSKCPEVERRIRVAER
Ga0209611_1000006449F000290GGAMSKSPNARRVGGPLAWEQLARPDTEQCQRFLAESLSLLLADLLRSVLSDASPALPADESAVERYRNLADSLADGESRRRTSLGITRAGLAKRCVTWLKLLLTPPPNGPSTAAMREFVDALGLFPALFDSEPSARSRRARLTWLLTHDRRLDASTREAATALIEACEHLAVLLWPDAETA
Ga0209611_1000006461F000386N/AMTMPPPMPYVTLHVPPDEMVKYIQDLMTLPHGEIAASSAMTLAQRHWGGDTPLARAALLRWGALNLAFQDKRLETWTVTRERDRIQVPAALVAAAGIAPLVIFNERAVFDIPALLDATLEFQPPAGQA
Ga0209611_1000006486F024238GGAGMIDDKQIETVSRRKVLAGGAQALAAIAVVVVGVKPAFSKAKSAKEDFYFQETPDDDTGRKCTGCINFSPKSTGDYGADSGDCALLIGDVCTHCYCQGWTDKNAPGAKKAGT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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