Scaffold Ga0209611

Basic Information
Taxon OID	3300027860 Open in IMG/M
Scaffold ID	Ga0209611_10000015 Open in IMG/M
Source Dataset Name	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209611_10000015 Open in IMG/M

Source Dataset Name

Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	181937
Total Scaffold Genes	218 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	120 (55.05%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

181937

Total Scaffold Genes

218 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

120 (55.05%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Ecosystem

Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Minnesota

Coordinates

Lat. (^o)

47.5028

Long. (^o)

-93.4828

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002736	Metagenome / Metatranscriptome	533	Y
F012093	Metagenome	283	Y
F015049	Metagenome	257	Y
F069606	Metagenome / Metatranscriptome	123	Y
F075588	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209611_10000015107	F002736	GAG	MSSISTQNFNSTNDDYKELSLSKGTDFKIETETLNAWISLNIDPNDMKFLSHIYSFMIYMIPKLQIQKSSNKGDMTKKPDMAESLQKLITLTKHILFF
Ga0209611_10000015208	F015049	N/A	MEVSSSSRIIKKFNGKPGTISLREFKATFLTVVCELELKYGTNYTEAFAFKQLARYVHYEALNVYKQHFSRILGVTQIPNPTYATAIAIAFQVALQTAIAHHGIVSNNLNLVPTSINLFPQQLIATTANIPPTIDALAFVDPMGEFFSSS
Ga0209611_10000015213	F012093	N/A	MECQLQMREMAQKLVSTPLFSFQDLKLNTKDIIAVLKDTLNITSCLLPILDPHATWLPSNTLERHLISSCVTDGVRNLVTSFNMTKLMGSPTSDSTFTYQKGVKNISLMDMLFSKSVVDSHSLHKISHSFSKVVPSERTSIATRVAIVNNTKLAIQVGRHTPKVVLFDIGAQPMILGIQFTKKMGMFDSKLGKSMWQKFAPLVGVS
Ga0209611_1000001585	F075588	AGGAGG	LEQRISKLSLDKGNKLKEGHGGLPRENVLCVCGKERKKRGKCEGEFFLVLMCGEVFMEKVCARIKYGRKLCVTNTCSKAFGFLVQLVIPPKSTVGFLSK
Ga0209611_1000001587	F069606	AGG	MLILKFELILFKSLIEVKLNKDVLRLHLKNLISTSLVLEDSSTD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209611_10000015

Overview

Ecosystem & Geography

Associated Families

Sequences