Scaffold Ga0209503_10000296

Overview

Basic Information

• Taxon OID: 3300027859
• Scaffold ID: Ga0209503_10000296
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33523
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (93.10%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -17.283
  • Long. (^o): 2.9768
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005813	Metagenome / Metatranscriptome	389	Y
F006217	Metagenome	378	Y
F009070	Metagenome	323	Y
F032681	Metagenome	179	Y
F035540	Metagenome / Metatranscriptome	172	Y
F040605	Metagenome / Metatranscriptome	161	Y
F052260	Metagenome / Metatranscriptome	143	N
F053978	Metagenome	140	Y
F082532	Metagenome	113	N
F087042	Metagenome	110	Y
F089520	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209503_1000029613	F040605	GAG	MKRKFSVTYMMEVDEENNFLSAHEEGHVEDVHDLVSNLMHDVDDIRIHNLMVKERQ
Ga0209503_1000029615	F089520	AGGAG	MGHEIEDDEVAIIIKPDIGEDGDWSGELKTGLVFGNASHPLATRAAMDLALTMASCINVLEQFPELFDYFEDSRHELLKEMFPKAYAESELEVDKEMDYTTDGNVIKLTKWTKTLGEA
Ga0209503_1000029622	F009070	AGGAG	MRLAIVIDVDGDIMYVPEGAVFENYPKPKLFDNLKDAQEECAKWNTGIIVDFDTNKSVPIVKSFTDEERRRSMEREEINKDDGTGTTKDTTQ
Ga0209503_1000029628	F006217	GGAG	MIELLLAMVEEPNQIHKYCMSKHEHWTGRAACVQQLQHVQRKMEVEELRQFLKENPHYRYPGMALPNGRIKPLDVCWASSKTYGTKGLC
Ga0209503_1000029629	F005813	GAGG	VKLYKNSEGVWAGTQADARKMCGKTYSTVDVPTDKPNLLKFLNLNQVGSYTSNDKQGTITGEIDTSNKSAMSWIRWSHDCMCRGQYEDAKEMLRKGLELANDRTTTSNG
Ga0209503_1000029632	F053978	GGAGG	MHINETTKQMIREIVVELFKEVSSKQTFGVSDEVLMLDEHLNDWTGRKIDKYKVNVYGATLEERY
Ga0209503_1000029634	F087042	GGAGG	MNIEQICIASFKSMFDERIADGVDLSPTYIEMLVKEHCEPYMIVTQGFTHDLLANALDRMDWEYMSYHVNHWQYRENKDVT
Ga0209503_1000029638	F032681	AGGA	MSFDVKNNMKVRALSKRLNLEVGMPTSMAVEEALTYLTMSFHKRNVDSIKAAELLRWWLVDFQDKELEYFETRLDLAKQVRNK
Ga0209503_1000029639	F052260	AGGAG	MFVILATKPLNDGTKGFRFNFFGKKGIVRRRKLQSNGIKFTKGDCMNAYHIGKTTVYTEQVATKRKLCHFAG
Ga0209503_100002966	F082532	AGG	MDLEREAKEYMEAKRKGKIICPKCDTEMIQGGDHDGEDDYIVSNFSCNTCDTFLLLYWK
Ga0209503_100002968	F035540	AGGA	MAWVLVALFIFNEEPMIMSDNILYESREQCNEAATERSDYLEATRPKAMWEADYWVWCTQIPQEV