NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209013_10015855

Scaffold Ga0209013_10015855


Overview

Basic Information
Taxon OID3300027858 Open in IMG/M
Scaffold IDGa0209013_10015855 Open in IMG/M
Source Dataset NameOil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5927
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oil Seeps → Unclassified → Marine → Marine Microbial Communities From The Santa Barbara Channel Oil Seeps

Source Dataset Sampling Location
Location NameCoal Oil Point, Santa Barbara, CA
CoordinatesLat. (o)34.39192Long. (o)-119.84578Alt. (m)Depth (m)47
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018541Metagenome / Metatranscriptome234Y
F026568Metagenome / Metatranscriptome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0209013_100158553F018541AGGMYSPIMRSFWVDFPLNAEQYSKLKLKWRRRQNNYEIQNSPPELRIRTFCTFGGDDYQVISLEARGDVNDYATALEVMDKWIVETLGTY
Ga0209013_100158554F026568GGAGMHKQTEHKELYDPFAHYIRGVLSHDDETYSFVAYRMPYLELDDKTWETEQAFTADYQRLIARKYSV

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