Scaffold Ga0209013_10015855

Overview

Basic Information

• Taxon OID: 3300027858
• Scaffold ID: Ga0209013_10015855
• Source Dataset Name: Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5927
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oil Seeps → Unclassified → Marine → Marine Microbial Communities From The Santa Barbara Channel Oil Seeps

Source Dataset Sampling Location

• Location Name: Coal Oil Point, Santa Barbara, CA
• Coordinates
  • Lat. (^o): 34.39192
  • Long. (^o): -119.84578
  • Depth (m): 47

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018541	Metagenome / Metatranscriptome	234	Y
F026568	Metagenome / Metatranscriptome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209013_100158553	F018541	AGG	MYSPIMRSFWVDFPLNAEQYSKLKLKWRRRQNNYEIQNSPPELRIRTFCTFGGDDYQVISLEARGDVNDYATALEVMDKWIVETLGTY
Ga0209013_100158554	F026568	GGAG	MHKQTEHKELYDPFAHYIRGVLSHDDETYSFVAYRMPYLELDDKTWETEQAFTADYQRLIARKYSV