NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209166_10000181

Scaffold Ga0209166_10000181


Overview

Basic Information
Taxon OID3300027857 Open in IMG/M
Scaffold IDGa0209166_10000181 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)81043
Total Scaffold Genes81 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)56 (69.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007764Metagenome / Metatranscriptome345Y
F016029Metagenome / Metatranscriptome250Y
F042446Metagenome / Metatranscriptome158Y
F086979Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209166_1000018115F086979N/AMLKYEYINKEWIVSPTARRVYRASAALSVALFFGWWAILFVGGIPSTIASTVRLLLLAGVLGAGITFVGMEFFLFRFDDSHPLKQFVWFLVMLFPLLGAALYCFTVYSRSNVLKNSCAERPEGVPL
Ga0209166_1000018128F042446GGAGMGYPGLITDFDATQPDLTNIHGMLGLMLTPWGKVVPVSRSTDRTRSEELQKLCEKVIGSVTLRR
Ga0209166_1000018135F007764N/AMPVTVEMHNTGSADSQRDVVALIEHVLADRTGDWRVVILGSQGSDRWEMKITGPNAFERSYTLEGELGQHEPSSVAAIVSKMLPPKP
Ga0209166_100001818F016029GAGGMKRVLILILALTTLAAARDKKSKAQPGPYVFTSKASAQTLKGLIVQQNLRGGYTLDADQQLQFRFSKPAQMPLIESVFVASSACPGMTTKKVWSYTLAELNGTTTVTVEPVWEYPDDYCHTQTQALIWSQRDEIAAFQAMLDKASTSTAAQ
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