NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209166_10000101

Scaffold Ga0209166_10000101


Overview

Basic Information
Taxon OID3300027857 Open in IMG/M
Scaffold IDGa0209166_10000101 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)112590
Total Scaffold Genes98 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)66 (67.35%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001500Metagenome / Metatranscriptome682Y
F038319Metagenome / Metatranscriptome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0209166_1000010170F038319GAGGMLDLWWAAPLTDERARNVLLSLNPNADAVNIYSTLERYKKDAWKFGVCLNEFVLRNGAQAANDARAAWSEIVTHNSGADPNVNYELDSKSLDLLASDVRAACLKQLFSYSRMTHGNGRVLRMGTAATFQPKE
Ga0209166_1000010173F001500N/AMANQNEFAGVFPKVIHPINDGETTITEYVEKIEGEVALDSYVKAQTSAPEVVKRITELETCLQQLATAALASLNGSGHAGLRAAVEDAKLVLKNRLEIDESKHRFPSELGRIIKFPPPLFPEE

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