Scaffold Ga0209693_10009466

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209693_10009466

Scaffold Ga0209693_10009466

Overview

Basic Information
Taxon OID	3300027855 Open in IMG/M
Scaffold ID	Ga0209693_10009466 Open in IMG/M
Source Dataset Name	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4549
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location Name	USA: New Hampshire, Hubbard Brook experimental Forest
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F095542	Metagenome / Metatranscriptome	105	Y
F103365	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209693_100094661	F103365	GGA	MARRKLTETANHFGGVLATARWQGHIKQLEKPSSSQGEISGADLTYNRQHREKEGWREGGGGASSSGETA
Ga0209693_100094664	F095542	GGAGG	MKASELFVTSALILLVFALVARFISSSGLGIAIPFRGTGYVLPPSTICVGLATALCFVATIYSLWMLPFNRTATLFHFWLTAFGIGVFWLGFYRAPNSRTAMWAVFAAPAAVLLTQVIFVWNLIQAILRMPRLHS

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