NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209517_10186658

Scaffold Ga0209517_10186658


Overview

Basic Information
Taxon OID3300027854 Open in IMG/M
Scaffold IDGa0209517_10186658 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1292
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002761Metagenome / Metatranscriptome531Y
F016632Metagenome / Metatranscriptome245Y
F025427Metagenome / Metatranscriptome201Y
F027079Metagenome / Metatranscriptome195Y
F078122Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0209517_101866581F078122N/AARLPALCALERLANPAPTVPRNKAGLTLGVVLAALLGSLGMGALIGLGTGMAHWIAHLFA
Ga0209517_101866582F016632AGGAGGVTGILELFALVELGSAIGFLASWRNKVLNAKVNFFRQPNNRPSPYDKVLRGKVGRAVSKQDCLRLQLADGLVDLIRKLVQYEAFRQVVHGLALAHSPMRQALRKKGGRPW
Ga0209517_101866583F027079AGGAGGVIRTFLNLCLISFLNTLAYMVALVAAFAVAWAAVCGARWIFAALQNAVIALWPRRRKKEIYAHATR
Ga0209517_101866584F025427AGGAGMQPGEMGELLVSLETCPIQKTGLVWRLLKLYWKKLSFVVLMLILPGGLWILGLCAAVWALNWGGEMQAYQEEKYRRWKEEHGIHS
Ga0209517_101866585F002761AGGTGGMVFTPSPTGSFTAGAVFWSMVWAGLGKLNELARFVGFKRSKPRESALRWINSHKVITLTATEVVNYSVHGITSPLGVTFALGGTLVNAFVVMFVVPIWCRLSNLESH
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