Scaffold Ga0209517_10034681

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209517_10034681

Scaffold Ga0209517_10034681

Overview

Basic Information
Taxon OID	3300027854 Open in IMG/M
Scaffold ID	Ga0209517_10034681 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4129
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location Name	Germany: Weissenstadt
Coordinates	Lat. (^o)	50.13	Long. (^o)	11.88	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024736	Metagenome / Metatranscriptome	204	Y
F088421	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209517_100346811	F024736	AGGAG	MRKVIVILLFASFALLGLASHDAVVYGQEKAAVGPQVTRWHGHIVRLYKDESKMDVRRGNSIKTIRFDSSTKWTEGTKVIDISEFKEGSDVVCLGTYESGSKVMTATRVDLRRH
Ga0209517_100346812	F088421	AGGAG	MRQFLVILLFAAIAVVGLASHNAVVNGQEKPAAAAQSVRWDGHIVRIDNDNMYMDVRDKDGQSRRIHWNSSTLWTKVNKKVADHSGFKEEERVICLGTVDKKGEYTATRIDLRVHLNP

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