Scaffold Ga0209517

Basic Information
Taxon OID	3300027854 Open in IMG/M
Scaffold ID	Ga0209517_10018631 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027854 Open in IMG/M

Scaffold ID

Ga0209517_10018631 Open in IMG/M

Source Dataset Name

Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6644
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (92.86%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6644

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (92.86%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location Name	Germany: Weissenstadt
Coordinates	Lat. (^o)	50.13	Long. (^o)	11.88	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Germany: Weissenstadt

Coordinates

Lat. (^o)

50.13

Long. (^o)

11.88

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F005112	Metagenome / Metatranscriptome	411	Y
F016632	Metagenome / Metatranscriptome	245	Y
F025427	Metagenome / Metatranscriptome	201	Y
F028392	Metagenome	191	Y
F039911	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209517_1001863111	F028392	AGGAG	MPNTIAVVHLPEALRNGSSALVKLAGKIDSFSLVLWRTPESQLKRQIEEDYHAMVFTTRKEVRKYCPKYRYFPGEGILDFSTDCASGQLEVGDLGTPPQPKRGKLCQQCCFFLGEPEGEVSEITVSKTPEHLVRGSMHGTSGPISTVNRNRSCPSTLPQPLSQ
Ga0209517_100186313	F005112	AGGAG	MSLVAKYKLFWAACIATLCGLAFWKNSKSYPRKSRLWRLGKSVIDTGLVLLMILYAPALLLMYVVIWLTSPFKNRIMQSTAAFASILAVSHLAGIVFEAVAVFGVFAVDLVTGQVVARMDRRNRKEAARAA
Ga0209517_100186314	F039911	AGGAG	MKYTIAALLAVVVAIAGYFGIRHLTRKDLGFTPAKRYASKLASTLIHTEATAAQEAGVSPAA
Ga0209517_100186315	F002761	AGGAGG	MTFTPSSTSSFAAGAVFWSMVWAGLGKLNELARFVGFKRARPRESALRWINSHKVIALTTTEVVNYSVHGVSSPLGVTFALGGTIVNTLMVAFVVPIWCRLTRLESRLS
Ga0209517_100186316	F025427	AGGAG	MRPGEMEELLASLKTCPVQKKGLFWRLLKLYWKKLLFIALMLVLPGGLIVLFLCVTAWALNWEHEMTAYMDETFKKWKEEHDLHSE
Ga0209517_100186318	F016632	AGGAGG	LTGILEVFALAEIGSGIGFLASWRNKVLKAKVNFFRQPNNKSSPFDKVLRAKVGRAFTRQDRLRLQLADGLVNLIRKLVQYDAFRQVVRGLALAHSPMRQALRKKGERPW

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209517_10018631

Overview

Ecosystem & Geography

Associated Families

Sequences