Scaffold Ga0209517_10007627

Overview

Basic Information

• Taxon OID: 3300027854
• Scaffold ID: Ga0209517_10007627
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12898
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013913	Metagenome	267	Y
F014639	Metagenome	261	Y
F020887	Metagenome	221	Y
F025336	Metagenome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209517_100076275	F014639	AGGAG	MSEITQFATPVSMETGFLKRKWKWILFFFEKRAFESKLEGILRAAAGHEGNSLPAGEHQYQLLSVEADSLCTEFADRWGLDVDLLRARIPGLAKLAGLSVPPPMKNYARLCFGVIAIPLALFLIGAMAGLVSVGFHLVGGR
Ga0209517_100076276	F025336	GGAGG	MALIALIAAAEAMLYSASRSKRGQSRRQQVLMGNSMDSVRALPLVDEYLKRKTAGASRVQTFVASKLAEVCRRAVHTRSFEYLVLHLIRTAIKRRSKYLNLQRRVTICK
Ga0209517_100076277	F013913	AGGAGG	MQVTPTMRGSFFAGIGLWVLVWALLFKGDEIAKAGGFERWVSSDRCLRWIRNHKSTSLIGTELCNYAHTGLDPLGVTFALGGTLTNVLVIYVLLPLLDKAKRGSKALNLQF
Ga0209517_100076278	F020887	GGAGG	MRTKITFYGEIAGHIWMPAVECTKAFDLELIRIPRNSNTRTYPGIAPRSMEITCLRDALLHLTNDGDFQSCVITWARLEVSHFFGNETDGTHTVKIRTRVWELRGQGQDADCFAGVRS