NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209517_10005895

Scaffold Ga0209517_10005895


Overview

Basic Information
Taxon OID3300027854 Open in IMG/M
Scaffold IDGa0209517_10005895 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15395
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (91.30%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002761Metagenome / Metatranscriptome531Y
F005112Metagenome / Metatranscriptome411Y
F010071Metagenome / Metatranscriptome308Y
F039911Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0209517_1000589514F039911AGGAGMKYTIAALLTVVAAVAGYFGIRHLTRKDLGLTPMKHYATKLANTLTHTEATAAQEAGVSPAA
Ga0209517_1000589515F005112AGGAGMSLVAKYKLFWAACIATLCGLAFWKNSRSYPRKSPLWRLGKAVIDTGLVALMVIYAPALLLMYVVIWLTSPFRNKIIQVSAAFASILAITHLAGVVFEAVAALGVFAVDLLTGQVLARMDKRERNKLAKAA
Ga0209517_1000589518F010071GAGGMNRLVNLALSVGETLVHEAGRLLFGIALGRAKELLGTPQPLGARQLALNRALQKKTVDGALLAGPVTGREYAKFTLKKGLPTDQRTRLLAVENEPHSVKDFNGVIKEGYGKGEKRLIYSGTGVIKVSESCQLGKINVHEHQAQKAGFHYDFVAEGVDPHTRSFEVNIANGVLKGRYAFRQAFEENRYLVVRLKDNPSKSEAGLLMYSEALAGGNPEESRRTVFRVKSSSGWKRKT
Ga0209517_100058959F002761AGGAGGMTFTPSATSSFSAGAVFWGMVWATLGKLNELVHFVGFKKSNPRQTVLRWINAHKVVTITLTEAVNYSVHGISSPLGVTFALGGTLVNIFMVTFIVPIWCRLSRLESRL
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