Scaffold Ga0209517_10004273

Overview

Basic Information

• Taxon OID: 3300027854
• Scaffold ID: Ga0209517_10004273
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18850
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007663	Metagenome / Metatranscriptome	347	Y
F052829	Metagenome / Metatranscriptome	142	Y
F079168	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209517_1000427310	F052829	GGAG	MTISRFTPPLDYLQAASRASLQSFELARLNHAANLRQEIAALIDQWIQETSEAMLARWMLDHHKSLQASPMIASEVVRTMFDPPTTLFPESQPPLTDIVPAPPRFSDSRAAMKGSISRKPQKQRQSAAG
Ga0209517_100042732	F007663	GAG	MASNPNYVKKQIALDTVSWTAVVAPVDCIAVSIKNSVLVDLRIRTDSADATTQDTISAGSIETISAPRHSGGVQDGGSGTRFYAGDTIAYLQVVSGTGPALLTFVR
Ga0209517_100042733	F079168	GGAGG	MKNKSPFVLTIGQFEHRGGKKLGQLNTEFFHKKREVRKHPTGGFRGRKG