Scaffold Ga0209517_10002720

Overview

Basic Information

• Taxon OID: 3300027854
• Scaffold ID: Ga0209517_10002720
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24604
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (68.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000725	Metagenome / Metatranscriptome	918	Y
F000949	Metagenome / Metatranscriptome	823	Y
F099977	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209517_1000272018	F000949	N/A	MKTSEQGSGAGSDAWFYLLAAVCGVGTGVADVTVNDLLFTALLVLASCMMLGLLRRRHPWRWVVAVGVFIPLTELAAYLLLTVKPTRAQVYGSILTFFPGFAGAYGGSFMRGVMDNLSQG
Ga0209517_1000272022	F000725	AGG	MGHTLKTLRLVQWLMLASILLYVIVAEVVAPSIRPVKPTLGYLFATIAVTIVGVIFVVRRTLVLKAEESLATRPDDSLSLSHWRTGYIMTYALCETLALFGFALRFLGGNLQQSLPFYIGGFTLMLFFRPRAPVSPSST
Ga0209517_100027206	F099977	N/A	MPAKATNLNKHGAAIQLHRELLVGSIVSVKNKHGIQVAARVVSQLVARNGVPTYAIEFVEQDDKAKDFWGISFPSAT