Scaffold Ga0209517_10002487

Overview

Basic Information

• Taxon OID: 3300027854
• Scaffold ID: Ga0209517_10002487
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25848
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001851	Metagenome / Metatranscriptome	626	Y
F007331	Metagenome / Metatranscriptome	353	Y
F022188	Metagenome / Metatranscriptome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209517_1000248710	F007331	AGTAGG	MLIEQPRGKNGIAMSTIEEVRAAEKKVKEVLESLKKAGAQDPNHLSTELRKATDDYARAVRELDSN
Ga0209517_1000248716	F022188	AGGAG	MQRLHWCLGSLLLGATLIAPVGLQAKDRHENCPNNGYYDRDHRDCHTWDEHEGRAYQSWQEARHKTHREFSRLKAREQSEYWKWRHEHPDDDRDRH
Ga0209517_1000248719	F001851	AGAAGG	MSAASISLDLLIVLFSILLLRWMLKRKPQAARVGSQRMCPFCGLITSRLKVRCMECGKPFTAVAYSTSKK