Scaffold Ga0209517

Basic Information
Taxon OID	3300027854 Open in IMG/M
Scaffold ID	Ga0209517_10000589 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027854 Open in IMG/M

Scaffold ID

Ga0209517_10000589 Open in IMG/M

Source Dataset Name

Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	61189
Total Scaffold Genes	53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	44 (83.02%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

61189

Total Scaffold Genes

53 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

44 (83.02%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location Name	Germany: Weissenstadt
Coordinates	Lat. (^o)	50.13	Long. (^o)	11.88	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Germany: Weissenstadt

Coordinates

Lat. (^o)

50.13

Long. (^o)

11.88

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028682	Metagenome	190	Y
F043352	Metagenome / Metatranscriptome	156	Y
F076771	Metagenome	117	Y
F098493	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209517_1000058918	F043352	AGG	VRISRSGAFPTLVKYLERCIDNHMAHWKVIALVNGQIEAVSGPAAQDRPGAHEWIVWQGPAADKAEALQSAEKADPRVDLEWMRIRYERDLSQR
Ga0209517_1000058919	F076771	AGGAG	MYSADQSSLVSAYGAFFGAWPWDHYATLTFARKLSDSTCLRHWDEFVDSLGRVTHGRVAWVRADERRWSGHASPEIPLHYHALIKYRNVPAPEDVADLWRSRAGDAKVEAYDCGGGAAYYVAKMFPYEDTRYDLGGLEHFARPPESRREWVQ
Ga0209517_1000058922	F098493	AGGCGG	MNQAMITSIEPELIIPQADPAPVARRETTLPARLIVTMDDCDYVVKRLLHQDDPNLSRRLYQYVVTFPLWDKLVRRAQLKYLRACTRDLLLNGLCCQLIREDRKDGQPDLVARARIWRHFAEQCAEGKSDIPDAKDWEITGWIPKDGANGSRRETRYCVHKLAGGRSCSRAFRVCPDSNQTKCPPHHQADRFPGMAYKN
Ga0209517_100005895	F028682	AGGAGG	MRILLKVTSSNEYCDGGCDFALVDLSPELAALALQRIAALRDQKTFDPNIVETYYWAYFAACYFSPYAGLAIDDMEAEGASIPLGDQLHELQIEDKEIVCAPASFQVPPGQVAAVECEKMLVRVDSIAFTAIPKHASFHVQTVEVPLTMLEAALAISPSTTQA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209517_10000589

Overview

Ecosystem & Geography

Associated Families

Sequences