NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209517_10000328

Scaffold Ga0209517_10000328


Overview

Basic Information
Taxon OID3300027854 Open in IMG/M
Scaffold IDGa0209517_10000328 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)84652
Total Scaffold Genes66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)53 (80.30%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004161Metagenome / Metatranscriptome450Y
F014363Metagenome / Metatranscriptome263Y
F046144Metagenome / Metatranscriptome151N
F062060Metagenome / Metatranscriptome131Y
F093119Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209517_1000032846F004161AGGTGGMTQTRCDVLSCVEHERLEFELLEVRTRGQYLTRLRSISREERAEWDRREQRALASLVDHELEHGCSR
Ga0209517_1000032849F014363GGAGGMSALEVHPEIHARELREHPAFSTCHECHRSFRAKSEDQLCLELCDSCFDTMRQPCEPVVRVHVKARPCRPISR
Ga0209517_1000032851F062060GAGGVNPAFDILKKIGAVNFEWVEVVRDLQTAEARIQELQERSPGEYVVYSQRTQEIVVRFNSPIEGASET
Ga0209517_1000032858F046144GGAGGMFESPLKQEQKSSKTGLWIGIGIVVVLAVAALLYVTSKHGAKGPAPVATLTNVKADPVHDLRVVSAKMDKDFSGTTAMWSVDIKNSSAELTYSNIAYETTYIGGENRVLLVNQGKIPVTIGPGDDQSSQFRDTLYPTGTIWFKIKITDATAAK
Ga0209517_1000032859F093119N/AMAPTKNRSAGVTAAATLAVLGSAIVFSLWGWLFLPLLNLPADSNGHHAYQVYPVTFALIALVPPFLVVLGMSTGIGLFRLRPWARKAALLWASIALAFCLSMIALRPFETFAIPEHLVAEVESMKQLLAVSAVLMLLPVSIWWLFFFRLKSVVEQFQGRRPPASSSES

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