Scaffold Ga0209517_10000093

Overview

Basic Information

• Taxon OID: 3300027854
• Scaffold ID: Ga0209517_10000093
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 145356
• Total Scaffold Genes: 165
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 125 (75.76%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004356	Metagenome / Metatranscriptome	442	Y
F057548	Metagenome / Metatranscriptome	136	Y
F072536	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209517_10000093111	F057548	N/A	MQYRIEISTSREGVAKIHLPGRSLELQARGDPAAGWQVAVVDPQQPPQDEAANIVALDAASANDAVWRVARAAVRAVSELTDSPLEDELRHDPD
Ga0209517_1000009360	F072536	AGG	MSRSTLTRRERAPLVTDAIPPPLRRRGISQCQFLVTALVGALLLALFASRDTPGWAERLGDTAFDHQVRNIVGAWDGTMERLGLTGPHDRLRDAMQRALDWQWQ
Ga0209517_1000009363	F004356	N/A	MSKKKSRAWFVCPQWTKLVSDHYADDVEAGRALGVDPRVLAKLRSGTPVAKSTMLKMLRRSAPRHGLRTPAGELIVDTRAR