Scaffold Ga0209517

Basic Information
Taxon OID	3300027854 Open in IMG/M
Scaffold ID	Ga0209517_10000057 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027854 Open in IMG/M

Scaffold ID

Ga0209517_10000057 Open in IMG/M

Source Dataset Name

Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	179527
Total Scaffold Genes	179 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	131 (73.18%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

179527

Total Scaffold Genes

179 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

131 (73.18%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location Name	Germany: Weissenstadt
Coordinates	Lat. (^o)	50.13	Long. (^o)	11.88	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Germany: Weissenstadt

Coordinates

Lat. (^o)

50.13

Long. (^o)

11.88

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005283	Metagenome / Metatranscriptome	406	Y
F009917	Metagenome	311	Y
F053998	Metagenome	140	Y
F091200	Metagenome / Metatranscriptome	107	Y
F098497	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209517_10000057167	F091200	GAGG	MADALAGMCAELCMEQVEPEQALERIQEKALEQLVSLLDTRILPDAEAMDDCLGLIAEESERIACEALEKGMARLREGLALLESLESSEETEGIGREFAGGSVN
Ga0209517_1000005730	F053998	GGAG	MDEGRKKLLKKVPTRKLLASIKRDIRQLGRVTASAAKPKKK
Ga0209517_1000005743	F009917	AGG	MFSISYAILLAVVSIGAQLVVFLRWIHRRMRDDEINRVFLRDLALCHLPSIYRALYRMAERQGIELDEMPIVNYVDLQNGGRRH
Ga0209517_1000005783	F005283	N/A	MLELSPLQMQTLERLVAAGFRPIAIPPYESALCVHRGECAAVLAPVENGGLRLLAPATLMVDGNLSVRLKRAAGDVFVWKKKEVAATAERLKELEAFRAELVGMLEMTGRA
Ga0209517_100000579	F098497	N/A	MPTPLSLPCDGCGQPAFSAHLARRLQRLEWTTRYRPVHIDALLLGGISPEVDAAFLYYPEGNYQGEAANLLEALRISRAGRSADTILTEFQKRGLLLTHVLECPLEPGASPAEARLLLEKQLPTVVARIRRSLKPKRLVLFSKELAALAGKFTEAVLGSPVFTGPYGPLALDGSPNESEMEEFRRNLATTSLL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209517_10000057

Overview

Ecosystem & Geography

Associated Families

Sequences