Scaffold Ga0209274_10002153

Overview

Basic Information

• Taxon OID: 3300027853
• Scaffold ID: Ga0209274_10002153
• Source Dataset Name: Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9795
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location

• Location Name: USA: New Hampshire, Hubbard Brook experimental Forest
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008793	Metagenome / Metatranscriptome	328	Y
F084630	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209274_100021532	F084630	N/A	MNLKPLEPRSDFHGKDLMATAGLHRSQVTKRRSSRIALNAPIGLSGEDLQKGSFNISAKATNLNKHGAAIQLNRELKVGSTVIVRNKSGTQITARVVAQLSTLQGVPSYAIEFAEPDDGVRTFWGITFPSVESRGTPAQAAEQSGIMRRRRPTASQQD
Ga0209274_100021537	F008793	N/A	MLRNKSNSLQPDSNLLSSNLPECWLHCLVCPRRYRANLPSRLRPSLFGSD