Scaffold Ga0209274_10000256

Overview

Basic Information

• Taxon OID: 3300027853
• Scaffold ID: Ga0209274_10000256
• Source Dataset Name: Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39659
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (84.85%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location

• Location Name: USA: New Hampshire, Hubbard Brook experimental Forest
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005311	Metagenome / Metatranscriptome	405	Y
F018412	Metagenome / Metatranscriptome	235	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209274_1000025618	F018412	GGAGG	MSSAVNPEAATPSIPQAFEQSDRNPAVTDWGGTDAEGGQLPAPASSESRVTQPGPAPSANAGLTNYEAGDSADQVQDEAEREG
Ga0209274_1000025630	F005311	AGGAG	MGSGICGAALVRAANAMLTALGGDQVSLLLPAMATAGDAAGQLGLVDPGVQNIVIAPVVATNLPTGNLGPTRRIEFTLPASAIEVQLPTLGMGSVEDLFDAAMGLVYDGDIFHIEAVVTENFAGTAYFYVVTAVE