Scaffold Ga0209274_10000096

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209274_10000096

Scaffold Ga0209274_10000096

Overview

Basic Information
Taxon OID	3300027853 Open in IMG/M
Scaffold ID	Ga0209274_10000096 Open in IMG/M
Source Dataset Name	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	78112
Total Scaffold Genes	67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	41 (61.19%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location Name	USA: New Hampshire, Hubbard Brook experimental Forest
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F052072	Metagenome / Metatranscriptome	143	Y
F062016	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209274_1000009630	F052072	GGAG	MKTIFKFATLTLTLTIMMFAVSVSSFAAAAKAENLVRGIIGPVASNTSWSGYSTMALIPGAGLIPITSTKAVFYLGFTAGSEADINNMVLYTTARGSSTITASTPVTLGGISNPSIDLASATVCPVVEISDFNPCIVRLDPTTITLSALNDYYLVVYFTADDSNDTALGLTQPSFGQSSLRGSYVTGDESRLSVGGSIPNTPFSNQPYMLMYVMND
Ga0209274_1000009631	F062016	GGAG	MKSFYRLATLTLMMMVLAASAFAQKQVPETALVNLTEGQGTIASSGNPSWDGLSELVLIPGASLMGASSSTTALYLGFTGGSEADIGNMVLYEVPRNGSTVLKVEKVTLGATQSPSIVLTDTSTCPVQPVSVTNPCIVRLDTVKLALSPLDDFYFAIYFTLDTNNEKISGAGQTGSQGALSGFSIYGDQTRVGVKGALPTNEDTDQPPFFLAYIAND

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