NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209274_10000075

Scaffold Ga0209274_10000075


Overview

Basic Information
Taxon OID3300027853 Open in IMG/M
Scaffold IDGa0209274_10000075 Open in IMG/M
Source Dataset NameReference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)95149
Total Scaffold Genes81 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)56 (69.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000525Metagenome / Metatranscriptome1049Y
F002927Metagenome / Metatranscriptome520Y
F003855Metagenome / Metatranscriptome465Y
F008957Metagenome / Metatranscriptome325Y

Sequences

Protein IDFamilyRBSSequence
Ga0209274_1000007523F002927N/AMESESGRRSGFSLKGSAGLIVAMVVVAILLIALPAYRWFFVISVLIGLVIAGALTLWYRLHPIEDRDVHPKRPLGL
Ga0209274_1000007527F008957GGAGMIEAMTDAVEREKSGKLKKSNWWWPAGVVATSLAGAAAVVAFRGCWHSKMSWPVAVRGYSYQVCLNCGAMRLFDEKTFSAYGPFRNDLNELIVWEKSKL
Ga0209274_1000007529F000525N/AMRVTNRLWASSSFVSGYRFSDTISPSKSDAPLGAGQRRCALFAASRAWFLAALLCSSLACSPRDFLTRRLAADLISASDSFKTPQLFWLRTGAVSNKDFSSPESMVLQRRGWIIGTEEKCPAGVDPPPCWDVLLTPLGVDTIRPVISHALPDNGPIGIQVARRELLNISGIGKAGNFADVEFTWHWVSLNQVGAALYDGGVHYRSTVGFRGYDDGWRVVEQNLPSNQTLDEALRNAQPTS
Ga0209274_100000759F003855AGGTGGMSTDPHLTAALSPDLTEPLTCAQKETLQRAVAKIVALGEQAGVSADQMIDLLQSGLTVGELLQYLAALTGEVA
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