Scaffold Ga0209274_10000070

Overview

Basic Information

• Taxon OID: 3300027853
• Scaffold ID: Ga0209274_10000070
• Source Dataset Name: Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 98722
• Total Scaffold Genes: 108
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 85 (78.70%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location

• Location Name: USA: New Hampshire, Hubbard Brook experimental Forest
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000208	Metagenome / Metatranscriptome	1593	Y
F001010	Metagenome / Metatranscriptome	807	Y
F001533	Metagenome / Metatranscriptome	676	Y
F002004	Metagenome / Metatranscriptome	605	Y
F002094	Metagenome / Metatranscriptome	594	Y
F044615	Metagenome / Metatranscriptome	154	Y
F066447	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209274_1000007015	F001010	N/A	VIGSAAGKWLRFPFLYNTEDMAVRIEIQNTGDPQVRGEIVAILEHVLSDRPGEWRVSIVGSHANDNWEMKVEGPAGFERSYTLVGGAGEHQPAAIGSLVVRLLPTRKP
Ga0209274_1000007016	F002004	GAG	MRKIPNSRHLEEHISRALNKIRKPSTPEEITELLNRDLEPEDEPFQTKEVAERLRNTGDAVLTLYWSRTRPRR
Ga0209274_1000007022	F066447	GGCGG	MADRIACSCVTCPKCGIWVVLRPQNQLAFSKEKSLAICPAAECGKDFEFDANEARAFEVPLPLFERRHFYRSELQESGK
Ga0209274_100000705	F000208	GAGG	MRIRVTTRADLFEKRKQQHIERGYRIEDERPIPVNGFCSFIAVSEIPDSDAVGALIVQALNGMAR
Ga0209274_1000007053	F044615	GAG	VPSRAREGSSTSTAVAEKVRSILASKRLTLYRASQRSVALYGLSSPYFLPHQLYYDLRSGSFRPSIHQIFALSRISGYPVADWLRVFGFDLEDITRLQIEISSKRTIVLDTSLTNPNDWIPWLRNRPLGEPIRSITPLARLLEVGPRKRIASLPQLDRHFIYAKIGVEDALAFPDLTPGSIVRVDPDVTADLAAGQNSGISDRLFLIEHSKGFCCCRIRILDGAVIVPFDNGLSYAQVELHCPQEARLWGAVDLEFRPLLSGEEPKVPKDLARHWKPQLLPAHDDFGQLLKRTRTRMNLSIREAAAMSRMIAEVLKDDRYVTSPSSLSDYELRNLPPRDFHKIITLCSVYGVQFESVMKRMGIDVVEVGTESMPDRYLTRAVPTVATKHSDLETVGAGFVGKLLGQLLEMPLFLRDSLGYFARSAHVSLDDFFWVGGDDDPLHPFLADGLLAMVNRRRKTPFHFASKPWWQQPLYIVLMREGVYLACCCSVENGMLVIHPYSRDFHRSAQYRLHRDAEVVGQIVAIARRFS
Ga0209274_1000007057	F002094	GAG	VQPSAPDAELNSGDRVMGLADFGKPTGEFGTVEKTNEDDALVKWDDDGRTRQHQPSLKKV
Ga0209274_1000007090	F001533	GGA	MFRDKIGRLRVEVTDIQVLNQQFRRDGGNGTGSQLAHGQRSERLQAIQHELVQIADLGRRVVLTEQVKERHSSRLRPVKQKRAA