Scaffold Ga0209501_10051926

Overview

Basic Information

• Taxon OID: 3300027844
• Scaffold ID: Ga0209501_10051926
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2970
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.2588
  • Long. (^o): -156.0227
  • Depth (m): 208

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007771	Metagenome / Metatranscriptome	345	Y
F018265	Metagenome / Metatranscriptome	236	Y
F025858	Metagenome / Metatranscriptome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209501_1005192611	F025858	N/A	KEFSSEVNCWNYYDNGAGESKMLNSYGTQVLDHQGNKPDKDYMKKHRPAHRVYPTRMYKNHGGPLVWLTCDIKGRNEGL
Ga0209501_100519263	F018265	GAG	MSMELHTLRAVKITQNIFELRKVNREIVEVSKIMEVLERRKTMLENSF
Ga0209501_100519267	F007771	N/A	METIIHAKNIDKKVRLALYGMLHHSAIKLFPRRMKYVSIKLHLKHYVYDGVAMIEEDTRITNPRNFKIVIDPYRLEKDDWGRERNYSEWVSELLRTLAHEMVHVKQYIMGELTFKKGQMCWKKQKVDFKSGEDYYFSPHEVEAYGLEKGLQLGYTATWNKIETEKENG