NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209580_10000002

Scaffold Ga0209580_10000002


Overview

Basic Information
Taxon OID3300027842 Open in IMG/M
Scaffold IDGa0209580_10000002 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1016222
Total Scaffold Genes965 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)698 (72.33%)
Novel Protein Genes15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)14 (93.33%)
Associated Families15

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000174Metagenome / Metatranscriptome1764Y
F000391Metagenome / Metatranscriptome1196Y
F002295Metagenome / Metatranscriptome574Y
F003202Metagenome / Metatranscriptome501Y
F008157Metagenome / Metatranscriptome338Y
F008299Metagenome / Metatranscriptome335Y
F009085Metagenome / Metatranscriptome323Y
F010264Metagenome / Metatranscriptome306Y
F031625Metagenome182Y
F032063Metagenome181Y
F035095Metagenome173Y
F062666Metagenome130Y
F062921Metagenome / Metatranscriptome130Y
F077420Metagenome / Metatranscriptome117Y
F082400Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0209580_10000002171F008299GAGGMVTGKLLQFPMRNPDLFSREINCQILSSSKFNKILYAAIRALPHVKNSHCREQLKRALCDLLLPEDGVA
Ga0209580_10000002263F003202GGAGGMQKQHFTIALLITLVLSVTVTVWGFATSTTKTQLNDLNNQLQHAQGELTDTKLQLADANSKLNFLESSKTRVQVTAYALTEDFGPNPIFSNNTPARQAYAVPKHTLPTGKVLNVALSPLAERRLHAHLNDTLVLQTSRTHQKYVAKFVDRTAQTETRPVVDILFADAHQARIWGRQYLYAVNISRLDSPFGQQ
Ga0209580_10000002378F000391AGGAMDPETQQSESPYRVKIETESGQSATVPIAVLTPKQLEVFLQSEFKRLAQEAGIQGVRIHVERAIAADYEQREVTACLSSAKAQAA
Ga0209580_10000002385F035095AGGMNNQNNASRGAYGAAAAPAREKTGNAKPQHSVFGESPLAAKHVSYGLPCSNCKTYYGADLSACPICGNPQRVSVVEPVAVVAPAEQLPDPEKLEQERERFLSEFNSQVVASPLPPDLPAPAQHCNHIENHVSAPEAATICQGCYDRLQERVDVLEAAMHMDIKEAAQIVYDAVWSDPTDPSKTYQNAAQALLTELRRRSGVPQVFGPLQPPVN
Ga0209580_10000002405F009085AGGAMVQLLVVQLSLVFGVAGLLWPEKLVAVFDVLMFPWPATHRLVRANAWGALFLAVLLFVVVLAKLHL
Ga0209580_10000002453F077420GGAGGMKTLIGILALVFVLGLPALAQVQRMTSDDEAAFNGYYSRWLQDKQTNNRDDMISMEHHMQDLMSKYSIPSNTPYDAVASQNGASYNGYGDRDRDRDRGYANQWQNRLSPDDQNKFNKEYTKWQEANARNDRDDIDKHARNMEEIMSRYNIPQDTPFNEVATVGGYTSHMDVRQYQGRLSPDDQKKFDKAYEKWQRDRAGHDRDDIAKDEGKMQEIMAKYNIPRDVPYDVLASGNRGY
Ga0209580_10000002467F008157GGTGGMLPRMNIHVKGTTGVIIAAVIMAAVLIAFPAYRVFFAISVGIGVVVAGILYLRNKYRPITDKDIENKRPLGLS
Ga0209580_10000002510F062666AGGAGGMKIRFIAIYVALLGITMAAEAKTVRRFTLILDFSTCVTDPNNANIVVCQEKDGTGKPVGQIAVTFQGAIASDGTCATNFLCNGTWHEGYLYSLDGGTITVGTATAYQGQAPFQDEHGFAPVIGFSVGAITGGSGKYRDITGILTMRWDANVCICLFDIVEP
Ga0209580_10000002819F032063GAGVCHGSRTRHRLRAIVLGLFCLNACAGNHSLPPIGFVNQTQHSDAQLWKLWKAAQQSLSGQIDLNPVQRTITDAQPQVLPGDPRALNISPHQLVVSSQRDVSSAALYAATGVIRVDPTGLIACPQPCNVHFAPAYSLYAEPTSRYAASWEFSGNNFDFLVQYEFENQILNALGYDMRWR
Ga0209580_10000002850F062921GGAGVKKSHLFLGFLLGAMLSAVALDTPNVTGKWSGTLQMDGQNDAKPAYSIFYQDGSKLSGSVGPNEGEQDSFQGGKVEGDNLTFDVPQGPSGQGSLHVEMQVRGDQMTGRATWTGPPQHTGSGKISLKRVVEK
Ga0209580_10000002851F002295GGAGMTRAVQASCALYKILLFTYPGDFRLRFGSEMVTTFSDLISGEWEHNGLPGVARVWRSALGEVFSAALPLQLQRTIVVASSMALLSSFALFMTIVYAMTHTCSGQ
Ga0209580_10000002904F031625N/AMLTISLLACMASCGGGSDAICHCTPTATRAQDFRHAEKHVPLPNGTPAQTTVAQILTWPTGSDPTDSTPRTGRELTLYQIATAYLQNARLISFDCDIHLEISDTPDKNAPRVIVETPIDSEYCDNRKALQQALAKHGFQLRYVDNSAVSQSELPQALPVSVLGLAFRDFEHNRGSAEVGTPWELHPAEVTVQQ
Ga0209580_1000000291F082400GGAGGMKAFKSGEQVPASGTYLTLHLTPHRIPERELYFEGSRFPECKVCPAGVLYKLESPCVPIAMPAVTEIAATAC
Ga0209580_10000002910F010264GGAMYKGTLIDELIATVERAESSFRLEPEQESKLAYWYAVAQSELAHFDGLQLAGVA
Ga0209580_10000002953F000174GAGGMKNVYEVLRQKELELSRLEKEVEALRVAAPLLSDDKDISSDVPAAKPTLTTATPTPQQPIRIPQPAVNQPTARAAGWEDTAKRWP
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