Scaffold Ga0209262_10152695

Overview

Basic Information

• Taxon OID: 3300027841
• Scaffold ID: Ga0209262_10152695
• Source Dataset Name: Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Low cellulose week 11 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1107
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater → Freshwater Pond Sediment Microbial Communities From The University Of Edinburgh, Under Environmental Carbon Perturbations

Source Dataset Sampling Location

• Location Name: Crawford Collection of the Royal Observatory Edinburgh
• Coordinates
  • Lat. (^o): 55.9225
  • Long. (^o): -3.1724

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020197	Metagenome / Metatranscriptome	225	Y
F054064	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209262_101526952	F054064	GAGG	MTSKLTIPTISKASNKMASEGIKGLVGRKMTKSVKFMGEDIKISKLSVSEVLAIQERAKSIAENEAEGFNVLKLVIKSAVENASDLAEEDFNNFPLDELSRLSNEIMKFSGIGADQGK
Ga0209262_101526953	F020197	GAG	MEQKQKPFSMGYVLRTTAKHMRKSIDISIRKTFERVAEFGNDRSKSEEVFKTLSFLHTMRKQLDDFQAHNSDNFKGE