NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209089_10024633

Scaffold Ga0209089_10024633


Overview

Basic Information
Taxon OID3300027838 Open in IMG/M
Scaffold IDGa0209089_10024633 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4156
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016455Metagenome / Metatranscriptome247Y
F077192Metagenome / Metatranscriptome117Y
F092861Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0209089_100246335F016455GAGGMSNQELTTLSMWHEYQSNGGLADFETFYSHSRINQKLLVRVARGKALLTRSL
Ga0209089_100246336F077192AGGMNSFENIGRNLNRFRKVSGRKRTSWIDKMTPQGQAIYCAEFVENAAGFPIED
Ga0209089_100246338F092861GGAGGMMRSELIARLNTVRHEIETTGIKCNNYNLETIETCLYYFLDHEDADPHWE

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